Presumed Extinct: Fish Out of Water

LOST SPECIES OF THE BAY AREA

Presumed Extinct: Clear Lake splittail, thicktail chub

As with the presumed extinct ivory-billed woodpecker reported in Arkansas in 2004, there is always the chance that a long-lost plant or animal will be rediscovered, thanks to persistent searching and luck. That’s true even in a busy metropolitan area like the San Francisco Bay Area. In May 2005, botanist Michael Park stumbled upon a population of Mount Diablo buckwheat (Eriogonum truncatum) on the slopes of Mount Diablo. The buckwheat was a  species long thought extinct, last seen in 1936 by UC Berkeley botany graduate student (and later Save Mount Diablo cofounder) Mary Bowerman. 

Spurred by the rediscovery of the buckwheat, it bears asking today which plants and animals endemic to – but presumed extinct in – the San Francisco Bay Area scientists continue to search for in the hope they may still be hanging on by a thread, waiting to be found and protected.

Clear Lake splittail (Pogonichthys ciscoides)

thicktail chub (Gila crassicauda)

Thicktail chub (Gila crassicauda), top, and Clear Lake splittail (Pogonichthys ciscoides), foreground. Illustration by Devin Cecil-Wishing.

With major fisheries teetering on the brink of collapse, it’s unlikely that many people have noticed the plight of two Bay Area endemic minnows that haven’t touched a creel in 30 years or more. The Clear Lake splittail (Pogonichthys ciscoides), the lake-bound cousin of the Sacramento splittail (P. macrolepidotus), is said to have schooled in great numbers in Clear Lake, the largest natural lake in California. In April and May, the eight-inch-long splittail would venture into upstream tributaries to spawn. Three weeks later, the young would return to the lake to feed on zooplankton and the native Clear Lake gnat in silvery schools that led early settlers to call them “silversides.” In the early 1940s, Clear Lake splittail populations plummeted, but it wasn’t until 1973 that the fish was belatedly recognized as a species. At about that time splittail vanished from the lake, replaced by non-native bluegill and, ironically, the inland silverside (Menidia beryllina). The latter was introduced in 1967 by the state to control vast clouds of annoying but harmless Clear Lake gnats, and it likely outcompeted Clear Lake splittail for shallow shoreline habitat. Other factors that may have tipped the species toward extinction were the channelization and the diversion of Clear Lake’s tributaries, where the splittail spawned.

Although its bones dominate Native American middens along the Sacramento River, Putah Creek, and the Pajaro-Salinas drainage, the thicktail chub (Gila crassicauda) is even less well known. This four-inch-long chub was also found in Clear Lake, the Delta, the Napa River, Alameda Creek, and several other Bay tributaries. Up until the late 19th century, thicktail chub weren’t uncommon in San Francisco fish markets, and their remains have been recovered from 19th-century Chinese privies in the city’s Mission District. But as early as 1884 their populations were reportedly waning. In 1957, the last known specimen was caught in the Sacramento River near Rio Vista. Throughout the species’ range, stream diversions and modifications, the loss of tule beds and shallow lowland lakes, and the introduction of largemouth bass and other nonnative predators likely drove the thicktail chub to extinction.

Since both the San Francisco estuary and Clear Lake are regularly sampled, UC Davis fisheries biologist Peter Moyle says the likelihood of finding either species is close to zero. But Robert Leidy, an ecologist with the U.S. Environmental Protection Agency, remains optimistic about the thicktail chub. “It could possibly show up in any part of its historical habitat,” says Leidy. “It could be upper Coyote Creek, it could be the Pajaro drainage, it could be in North Bay marshes or the Petaluma River.”

Field Guide to the Lost Species of the Bay Area

SPECIES: Clear Lake splittail (Pogonichthys ciscoides)

LISTING STATUS: none

FIRST/LAST RECORDED: ~1930/~1970

RANGE: known only from Clear Lake in Lake County

HABITAT: Clear Lake and its tributary waters, plus an outlying record from Cache Creek (downstream of Clear Lake)

FIELD NOTES: a lake-bound cousin of the Sacramento splittail (P. macrolepidotus), Clear Lake’s shoreline splittail wasn’t officially described until 1973, approximately the time it went extinct; aside from geographic isolation, the differences between the species are morphological; compared to the Sacramento splittail, the Clear Lake splittail has more gill rakers, more lateral line scales, smaller fins, a terminal mouth with absent or reduced barbels, and a relatively symmetrical tail fin

RESOURCES:

Inland Fishes of California, by Peter B. Moyle

Field Guide to Freshwater Fishes of California, March 13, 1996, by Samuel M. McGinnis

_______________________________________________

SPECIES: thicktail chub (Gila crassicauda)

LISTING STATUS: none

FIRST/LAST RECORDED: present in Native American middens/1957

RANGE: reported specifically in Sacramento River, Putah Creek, Pajaro-Salinas drainage, Clear Lake, San Francisco Bay, Coyote Creek, Central Valley lowlands, and Bay tributary streams

HABITAT: lowland lakes, sloughs, slow-moving river stretches, and surface waters of the San Francisco Bay

FIELD NOTES: thicktail chub remains are reportedly common in Native American middens along the Sacramento River, and have been recovered from 19th-century Chinese privies in San Francisco’s Mission District; in the 19th century the fish was commonly sold in San Francisco fish markets and was served in Sacramento saloons; compared to other chub, the thicktail chub is a heavy-bodied fish with a small, cone-shaped head, greenish brown to purplish black back, and yellowish sides and belly

RESOURCES:

Inland Fishes of California, by Peter B. Moyle

Field Guide to Freshwater Fishes of California, March 13, 1996, by Samuel M. McGinnis

The account excerpted above was originally featured in the October/December 2007 issue of Bay Nature magazine.

Illustrations by Devin Cecil-Wishing.

The Natural History of California

In a bid to go green, the California Department of Fish and Wildlife (CDFW; formerly, the California Department of Fish and Game) is digitizing their 99-year-old quarterly scientific journal, California Fish and Game. In addition to making all issues post-December 2012 available online, they’re also dusting off the stack of journals in the archives. In the coming months, CDFW will be working toward digitizing back-issues dating back to 1914, when the journal was first published.

Back when the journal debuted, California was unquestionably a different place. Among the journal’s opening pages were these missives from the Board of Fish and Game Commissioners:

“The wild game belongs to the people in their sovereign capacity and as such should be enjoyed by the people and cared for and preserved for their benefit. It must not be considered as the property of a class and no class should be permitted to monopolize it… The right of any generation to careless indifference or wanton destruction can not be admitted. Each generation is the guardian of the existing resources of the world; it comes into a great inheritance, but only as a trustee; and there is no recovery or resurrection of an extinct species.”

– Ernest Schaeffle

“So often we lock the door after the horse is stolen. Let it not be so with the game birds and wild creatures of California.”

– Frank M. Rutherford

“Preserved game and fish, like preserved forests or preserved water powers, are of no practical public good. Preserved fish and game die; so do preserved trees; preserved water-powers run to waste. Conserved – that is, used and protected – fish and game, forests, water-powers and all other natural resources are, of course, of practical benefit to the public. And therefore, fish and game conservation – not preservation – commissions are of practical benefit to the public… Our game, however, can not be conserved, or even preserved, if the cover in which and the food on which it lives be not conserved. Our fish can not be conserved, or even preserved, if the waters in which they live be not kept at least free from pollution. If our wild places be permitted to be fire ravaged and destroyed, if our streams and bays be made the dumping grounds for noxious materials, then there will be no use for game and fish conserving laws, no need for a fish and game conservation commission – there will be no fish and game to be conserved.”

– George C. Pardee

During the journal’s first year alone (Volume 1 spanned 1914 through 1915), Joseph Grinnell, Director of the Museum of Vertebrate Zoology, University of California, raised the hue and cry concerning the “ravages of the house cat” on native bird populations and the decline of the wood duck; the price of a dozen quail and the bounty on mountain lion “scalps, or skin with scalp attached” were equivalent – $20.00, or $465 in today’s prices; Mr. Edward A. Salisbury was touring the state of California showing moving pictures featuring the wildlife of the west, including the life history of the steelhead trout, treeing and roping wildcats and mountain lions, and hunting geese for the San Francisco market; a game warden’s salary ranged from $720 to $1,500 ($16,759 to $34,915 in today’s prices) a year; and the non-native opossum was confirmed to have been introduced to California from Tennessee by a San Jose jeweler in 1910.

Curiously, the journal’s trademark green cover – a triptych featuring a trout, mule deer, and quail – didn’t make its appearance until Volume 1, Number 2, and has changed very little over the years. Looking backwards, that triptych is perhaps the only constant California has seen in the last century.

Western Pond Turtle Literature – Citations New and Old

For those of you western pond turtle aficionados, I hope by now you have stumbled across the western pond turtle literature page, where the bulk of the western pond turtle literature published between 1852 and the present has been meticulously indexed and posted for public consumption. I say ‘bulk’ because even I overlook a paper now and then, or fall behind in my indexing. But thanks to the gentle prodding of GL and LP – two fellow western pond turtle wonks – I’ve picked up where I last left off and offer the following new (and old) publications in case you too have overlooked them.

…

Abel, Jae. 2010. Western Pond Turtle Summer Habitat Use in a Coastal Watershed. Unpublished M.S. Thesis: San Jose State University. 111 pp.

Angielczyk, Kenneth D., Chris D Feldman, and Gretchen R. Miller. 2010. Adaptive Evolution of Plastron Shape in Emydine Turtles. Evolution. 65(2): pp 377-394.

Ashton, Don T., Jamie B. Bettaso, and Hartwell H. Welsh Jr. 2011. Comparative Ecology of Western Pond Turtle (Actinemys marmorata) Populations on the Free-Flowing South Fork and Regulated Main Fork Trinity River: Demography, Size and Body Condition Comparisons, Thermal Ecology, and Spatial Dynamics. Final Report to the Trinity River Restoration Program. June 10. 55 pp.

Bettelheim, Matthew P., R. Bruce Bury, Laura C. Patterson, and Glen M. Lubcke. 2006. Trachemys scripta elegans (Red-eared Slider). Reproduction. Herpetological Review 37(4): pp 459-460.

Bettelheim, Matthew P. 2009. Actinemys (=Clemmys) marmorata (Western Pond Turtle). Courtship Behavior. Herpetological Review 40(2): pp 212-213.

Bettelheim, Matthew. 2010. Native Son: Making Room for the Western Pond Turtle. Bay Nature. 10(2): April-June pp 40-44.

Bettelheim, Matthew P. 2011. Art in Herpetology. Herpetological Review 42(3): p 382.

Bettelheim, Matthew. 2011. Western Pond Turtles: Basking in Their Own Resiliency. Outdoor California. 72(2): March-April pp 22-31.

Bury, R. Bruce, David J. Germano, and Gwendolynn W. Bury. 2010. Population Structure and Growth of the Turtle Actinemys marmorata from the Klamath-Siskiyou Ecoregion: Age, Not Size, Matters. Copeia. 3: pp 443-451.

Bury, R. Bruce, Hartwell H. Welsh, David J. Germano, and Donald T. Ashton. 2012. Western Pond Turtle: Biology, Sampling Techniques, Inventory and Monitoring, Conservation and Management. Northwest Fauna 7: 128 pp.

Fritz, Uwe and Peter Havas. 2007. Checklist of Chelonians of the World. Vertebrate Zoology. 57(2): pp 149-368.

Fritz, Uwe, Christian Schmidt, and Carl H. Ernst. 2011. Competing Generic Concepts for Blanding’s, Pacific and European Pond Turtles (Emydoidea, Actinemys and Emys)–Which is Best? Zootaxa. 2791: pp 41-53.

Germano, David J. and R. Bruce Bury. 2009. Variation in Body Size, Growth, and Population Structure of Actinemys marmorata from Lentic and Lotic Habitats in Southern Oregon. Journal of Herpetology. 43(3): pp 510-520.

Germano, David J. 2010. Ecology of Western Pond Turtles (Actinemys marmorata) at Sewage-Treatment Facilities in the San Joaquin Valley, California. The Southwestern Naturalist. 55(1): pp 89-97.

Gordon, Rebecca A. 2009. Effects of Incubation Temperature on the Embryonic Development and Hatching Success of the Western Pond Turtle (Emys marmorata). Unpublished M.S. Thesis: Sonoma State University. 38 pp.

Lambert, M.R., S.N. Nielsen, A.N. Wright, R.C. Thomson, and H.B. Shaffer. In press. Microhabitat Characteristics Favor Introduced Red-Eared Sliders Over Threatened Western Pond Turtles in a Human-Dominated Landscape. Chelonian Conservation and Biology.

Lightfoot, Kent G. and Otis Parrish. 2009. California Indians and their Environment, An Introduction. California Natural History Guide Series No. 96. University of California Press: Berkeley, California. 512 pp.

Polo-Cavia, N., T. Engstrom, P. Lopez, and J. Martin. 2010. Body Condition Does Not Predict Immunocompetence of Western Pond Turtles in Altered Versus Natural Habitats. Animal Conservation. 13(3): pp 256-264.

Reynolds, Robert P., Steve W. Gotte, and Carl H. Ernst. 2007. Catalog of Type Specimens of Recent Crocodilia and Testudines in the National Mueum of Natural History, Smithsonian Institution. Smithsonian Contributions to Zoology Number 626. 49 pp.

Rosenberg, Daniel K. and Roberta Swift. 2010. Post-Emergence Behavior of Hatchling Western Pond Turtles. Final Report. Oregon Wildlife Institute, Corvallis, Oregon. 33 pp.

Shufeldt, R.W. 1919. Observations on the Chelonians of North America (Part IV). Aquatic Life. 4(12): pp 155-157.

Spinks, P. Q., R. C. Thomson, and H. B. Shaffer. 2010. Nuclear Gene Phylogeography Reveals the Historical Legacy of an Ancient Inland Sea on Lineages of the Western Pond Turtle, Emys marmorata in California. Molecular Ecology 19: pp 542-556.

Sproat, Gilbert Malcolm. 1868. Scenes and Studies of Savage Life. Smith, Elder and Co.: London. 317 pp.

Stebbins, Robert C. and Samuel M. McGinnis. 2012. Field Guide to Amphibians and Reptiles of California (Revised Edition). University of California Press: Berkeley, California. 552 pp.

Studebaker, Rebecca S. 2008. Actinemys marmorata (Western Pond Turtle). Predation Attempt. Herpetological Review. 39(4): pp 463-464.

Thompson, Robert C., Phillip Q. Spinks, and H. Bradley Shaffer. 2010. Distribution and Abundance of Invasive Red-Eared Sliders (Trachemys scripta elegans) in California’s Sacramento River Basin and Possible Impacts on Native Western Pond Turtles (Emys marmorata). Chelonian Conservation and Biology. 9(2): 297-302.

White, W.L. 1910. Turtles and Turtling in Many Waters. Hunter Trader Trapper. 20(2): pp 17-20.

Wilcox, Jeffery T. 2010. Actinemys (=Emys) marmorata (Western Pond Turtle). Predation. Herpetological Review. 41(2): pp 212.

Book Review: The Owl and the Woodpecker

The Owl and the Woodpecker: Encounters with North America’s Most Iconic Birds, by Paul Bannick, The Mountaineers Books (http://www.mountaineersbooks.org), 2008, 200 pages, $ 26.95.

Maybe I’ve spent too many years looking down, scanning the ground for wildlife (I am, after all, a herpetologist), but it wasn’t until photographer Paul Bannick’s The Owl and the Woodpecker that I realized how critical a keystone species woodpeckers are to their winged cousins. In much the same way ground squirrels interweave the earth with burrows that become superhighways and refugia for fellow ground-dwelling insects, amphibians, reptiles, small mammals, and even some birds (say, burrowing owls), so too does the woodpecker riddle the woods with cavities that become the tenements and penthouses for owls and an impressive array of woodland creatures.

Combining the best of both worlds, Bannick both shows and tells the rich natural histories of these two indicator species through well-researched text and jaw-dropping photography. Bannick, always fascinated by the glimpses of owls and woodpeckers fortune put in his path as a youth, decided in 2005 to photograph every North American woodpecker and owl as a way of drawing attention to these species’ plight and the questionable future of the sensitive habitats they depend on for survival. The result is a captivating compendium of facts and photography, a true testimony to Bannick’s mastery of light, timing, birding, and patience. In the scores of photographs Bannick carefully selected for these pages, his timing with the shutter freezes in place cascades of wood chips, wriggling insects bound for ravenous fledglings, the spray of feathers on touchdown, the buoyancy of wingtips on liftoff. Every page is one delight after the next, capturing the prismatic color and charisma of these spectacular birds.

Bannick’s photography unabashedly venerates the owl and the woodpecker, and rightfully so. If nothing else, Bannick’s work serves to remind us why it is so important to look up – to catch sight of these treetop totems.

Yosemite in HD: The Star Spangled Banners of Heaven

If ever there was cinematic footage that left me feeling awestruck, humble, and infinitesimally insignificant at the same time, this is it. If you haven’t already had the pleasure of watching Sheldon Neill and Colin Delehanty’s Project Yosemite’s Yosemite in HD (Part I), prepare to be amazed.

Although it is curious how much like spiders we resemble when pinned to a cliff face with carabiners and rope (time – 1:52) or how prolific are the numbers of satellites and planes challenging shooting stars for supremacy in the night-sky (time – 2:34) –  personally, the fireworks kick off when the sun drops and the stars pierce the night sky (time – 2:27), leaving me dizzy and reminding me of my precarious place on this swiftly tilting planet.

The buzz about Yosemite in HD Part II suggests a collaborative effort between Project Yosemite and The Muir Project, taking the cameras further afield to capture Yosemite in winter: more snow, more waterfalls, more remote. More awesome?